-----BEGIN PRIVACY-ENHANCED MESSAGE----- Proc-Type: 2001,MIC-CLEAR Originator-Name: webmaster@www.sec.gov Originator-Key-Asymmetric: MFgwCgYEVQgBAQICAf8DSgAwRwJAW2sNKK9AVtBzYZmr6aGjlWyK3XmZv3dTINen TWSM7vrzLADbmYQaionwg5sDW3P6oaM5D3tdezXMm7z1T+B+twIDAQAB MIC-Info: RSA-MD5,RSA, U74lsK5cbCCX8pygq102jA8AZvb2mjofK+WjKhR4igq6rDJH+40NHyzn2iQsijF2 ndXgxe1l+P/BZSnzAaL7mw== 0000950135-04-002963.txt : 20040607 0000950135-04-002963.hdr.sgml : 20040607 20040607105321 ACCESSION NUMBER: 0000950135-04-002963 CONFORMED SUBMISSION TYPE: SC 13G PUBLIC DOCUMENT COUNT: 1 FILED AS OF DATE: 20040607 GROUP MEMBERS: ALAN G. SPOON GROUP MEMBERS: JONATHAN A. FLINT GROUP MEMBERS: POLARIS VENTURE PARTNERS ENTREPRENEURS' FUND III, L.P. GROUP MEMBERS: POLARIS VENTURE PARTNERS FOUNDERS' FUND III L.P. GROUP MEMBERS: POLARIS VENTURE PARTNERS III, L.P. GROUP MEMBERS: STEPHAN D. ARNOLD GROUP MEMBERS: TERRANCE G. MCGUIRE FILED BY: COMPANY DATA: COMPANY CONFORMED NAME: POLARIS VENTURE MANAGEMENT CO III LLC CENTRAL INDEX KEY: 0001114126 FILING VALUES: FORM TYPE: SC 13G BUSINESS ADDRESS: STREET 1: 1000 WINTER STREET SUITE 3350 CITY: WALTHAM STATE: MA ZIP: 02451-1215 BUSINESS PHONE: 7812900770 SUBJECT COMPANY: COMPANY DATA: COMPANY CONFORMED NAME: ALNYLAM PHARMACEUTICALS INC CENTRAL INDEX KEY: 0001178670 STANDARD INDUSTRIAL CLASSIFICATION: PHARMACEUTICAL PREPARATIONS [2834] IRS NUMBER: 770602661 FILING VALUES: FORM TYPE: SC 13G SEC ACT: 1934 Act SEC FILE NUMBER: 005-79884 FILM NUMBER: 04851149 BUSINESS ADDRESS: STREET 1: 790 MEMORIAL DR CITY: CAMBRIDGE STATE: MA ZIP: 02139 BUSINESS PHONE: 6172520700 MAIL ADDRESS: STREET 1: 790 MEMORIAL DR CITY: CAMBRIDGE STATE: MA ZIP: 02139 SC 13G 1 b50806pvsc13g.txt POLARIS VENTURE MANAGEMENT CO. III, LLC SECURITIES AND EXCHANGE COMMISSION Washington, D.C. 20549 Schedule 13G (Rule 13d-102) INFORMATION TO BE INCLUDED IN STATEMENTS FILED PURSUANT TO RULES 13d-1 (b), (c) AND (d) AND AMENDMENTS THERETO FILED PURSUANT TO 13d-2 (b) (Amendment No.____)* Alnylam Pharmaceuticals, Inc. - -------------------------------------------------------------------------------- (Name of Issuer) Common Stock - -------------------------------------------------------------------------------- (Title of Class of Securities) 02043Q107 - -------------------------------------------------------------------------------- (CUSIP Number) May 28, 2004 - -------------------------------------------------------------------------------- (Date of Event Which Requires Filing of this Statement) Check the appropriate box to designate the rule pursuant to which this Schedule is filed: [ ] Rule 13d-1(b) [X] Rule 13d-1(c) [ ] Rule 13d-1(d) *The remainder of this cover page shall be filled out for a reporting person's initial filing on this form with respect to the subject class of securities, and for any subsequent amendment containing information which would alter disclosures provided in a prior cover page. The information required on the remainder of this cover page shall not be deemed to be "filed" for the purpose of Section 18 of the Securities Exchange Act of 1934 ("Act") or otherwise subject to the liabilities of that section of the Act but shall be subject to all other provisions of the Act (however, see the Notes). (Continued on following pages) Page 1 of 18 Exhibit Index on Page 15 CUSIP NO. 02043Q107 13 G Page 2 of 18 - -------------------------------------------------------------------------------- 1 NAME OF REPORTING SS OR I.R.S. IDENTIFICATION NO. OF ABOVE PERSON Polaris Venture Partners III, L.P. ("PVP III") Tax ID Number: - -------------------------------------------------------------------------------- 2 CHECK THE APPROPRIATE BOX IF A MEMBER OF A GROUP* (a) [ ] (b) [X] - -------------------------------------------------------------------------------- 3 SEC USE ONLY - -------------------------------------------------------------------------------- 4 CITIZENSHIP OR PLACE OF ORGANIZATION Delaware - -------------------------------------------------------------------------------- 5 SOLE VOTING POWER NUMBER OF 2,710,141 shares, except that Polaris Venture SHARES Management Co. III, L.L.C. ("Polaris III"), the BENEFICIALLY general partner of PVP III, may be deemed to have sole OWNED BY EACH power to vote these shares, and Jonathan A. Flint REPORTING ("Flint"), Terrance G. McGuire ("McGuire"), Stephen PERSON D. Arnold ("Arnold") and Alan G. Spoon ("Spoon"), the WITH managing members of Polaris III, may be deemed to have shared power to vote these shares. ------------------------------------------------------------- 6 SHARED VOTING POWER See response to row 5. ------------------------------------------------------------- 7 SOLE DISPOSITIVE POWER 2,710,141 shares, except that Polaris III, the general partner of PVP III, may be deemed to have sole power to dispose of these shares, and Flint, McGuire, Arnold and Spoon, the managing members of Polaris III, may be deemed to have shared power to dispose of these shares. ------------------------------------------------------------- 8 SHARED DISPOSITIVE POWER See response to row 7. - -------------------------------------------------------------------------------- 9 AGGREGATE AMOUNT BENEFICIALLY OWNED BY EACH REPORTING PERSON 2,710,141 - -------------------------------------------------------------------------------- 10 CHECK BOX IF THE AGGREGATE AMOUNT IN ROW (9) EXCLUDES CERTAIN SHARES* [ ] - -------------------------------------------------------------------------------- 11 PERCENT OF CLASS REPRESENTED BY AMOUNT IN ROW 9 14.1% - -------------------------------------------------------------------------------- 12 TYPE OF REPORTING PERSON* PN - -------------------------------------------------------------------------------- * SEE INSTRUCTIONS BEFORE FILLING OUT! CUSIP NO. 02043Q107 13 G Page 3 of 18 - -------------------------------------------------------------------------------- 1 NAME OF REPORTING SS OR I.R.S. IDENTIFICATION NO. OF ABOVE PERSON Polaris Venture Partners Entrepreneurs' Fund III, L.P. ("Entrepreneurs' III") Tax ID Number: - -------------------------------------------------------------------------------- 2 CHECK THE APPROPRIATE BOX IF A MEMBER OF A GROUP* (a) [ ] (b) [X] - -------------------------------------------------------------------------------- 3 SEC USE ONLY - -------------------------------------------------------------------------------- 4 CITIZENSHIP OR PLACE OF ORGANIZATION Delaware - -------------------------------------------------------------------------------- 5 SOLE VOTING POWER NUMBER OF 70,242 shares, except that Polaris III, the general SHARES partner of Entrepreneurs' III, may be deemed to have BENEFICIALLY sole power to vote these shares, and Flint, McGuire, OWNED BY EACH Arnold and Spoon, the managing members of Polaris III, REPORTING may be deemed to have shared power to vote these PERSON shares. WITH ------------------------------------------------------------ 6 SHARED VOTING POWER See response to row 5. ------------------------------------------------------------- 7 SOLE DISPOSITIVE POWER 70,242 shares, except that Polaris III, the general partner of Entrepreneurs' III, may be deemed to have sole power to dispose of these shares, and Flint, McGuire, Arnold and Spoon, the managing members of Polaris III, may be deemed to have shared power to dispose of these shares. ------------------------------------------------------------- 8 SHARED DISPOSITIVE POWER See response to row 7. - -------------------------------------------------------------------------------- 9 AGGREGATE AMOUNT BENEFICIALLY OWNED BY EACH REPORTING PERSON 70,242 - -------------------------------------------------------------------------------- 10 CHECK BOX IF THE AGGREGATE AMOUNT IN ROW (9) EXCLUDES CERTAIN SHARES* [ ] - -------------------------------------------------------------------------------- 11 PERCENT OF CLASS REPRESENTED BY AMOUNT IN ROW 9 0.4% - -------------------------------------------------------------------------------- 12 TYPE OF REPORTING PERSON* PN - -------------------------------------------------------------------------------- * SEE INSTRUCTIONS BEFORE FILLING OUT! CUSIP NO. 02043Q107 13 G Page 4 of 18 - -------------------------------------------------------------------------------- 1 NAME OF REPORTING SS OR I.R.S. IDENTIFICATION NO. OF ABOVE PERSON Polaris Venture Partners Founders' Fund III, L.P. ("Founders' III") Tax ID Number: - -------------------------------------------------------------------------------- 2 CHECK THE APPROPRIATE BOX IF A MEMBER OF A GROUP* (a) [ ] (b) [X] - -------------------------------------------------------------------------------- 3 SEC USE ONLY - -------------------------------------------------------------------------------- 4 CITIZENSHIP OR PLACE OF ORGANIZATION Delaware - -------------------------------------------------------------------------------- 5 SOLE VOTING POWER NUMBER OF 42,646 shares, except that Polaris III, the general SHARES partner of Founders' III, may be deemed to have sole BENEFICIALLY power to vote these shares, and Flint, McGuire, Arnold OWNED BY EACH and Spoon, the managing members of Polaris III, may be REPORTING deemed to have shared power to vote these shares. PERSON WITH ------------------------------------------------------------- 6 SHARED VOTING POWER See response to row 5. ------------------------------------------------------------- 7 SOLE DISPOSITIVE POWER 42,646 shares, except that Polaris III, the general partner of Founders' III, may be deemed to have sole power to dispose of these shares, and Flint, McGuire, Arnold and Spoon, the managing members of Polaris III, may be deemed to have shared power to dispose of these shares. ------------------------------------------------------------- 8 SHARED DISPOSITIVE POWER See response to row 7. - -------------------------------------------------------------------------------- 9 AGGREGATE AMOUNT BENEFICIALLY OWNED BY EACH REPORTING PERSON 42,646 - -------------------------------------------------------------------------------- 10 CHECK BOX IF THE AGGREGATE AMOUNT IN ROW (9) EXCLUDES CERTAIN SHARES* [ ] - -------------------------------------------------------------------------------- 11 PERCENT OF CLASS REPRESENTED BY AMOUNT IN ROW 9 0.2% - -------------------------------------------------------------------------------- 12 TYPE OF REPORTING PERSON* PN - -------------------------------------------------------------------------------- * SEE INSTRUCTIONS BEFORE FILLING OUT! CUSIP NO. 02043Q107 13 G Page 5 of 18 - -------------------------------------------------------------------------------- 1 NAME OF REPORTING SS OR I.R.S. IDENTIFICATION NO. OF ABOVE PERSON Polaris Venture Management Co. III, L.L.C. ("Polaris III") Tax ID Number: - -------------------------------------------------------------------------------- 2 CHECK THE APPROPRIATE BOX IF A MEMBER OF A GROUP* (a) [ ] (b) [X] - -------------------------------------------------------------------------------- 3 SEC USE ONLY - -------------------------------------------------------------------------------- 4 CITIZENSHIP OR PLACE OF ORGANIZATION Delaware - -------------------------------------------------------------------------------- 5 SOLE VOTING POWER NUMBER OF 2,823,029 shares, of which 2,710,141 are directly SHARES owned by PVP III, 70,242 are directly owned by BENEFICIALLY Entrepreneurs' III and 42,646 are directly owned by OWNED BY EACH Founders' III. Polaris III, the general partner of PVP REPORTING III, Entrepreneurs' III and Founders' III, may be PERSON deemed to have sole power to vote these shares, and WITH Flint, McGuire, Arnold and Spoon, the managing members of Polaris III, may be deemed to have shared power to vote these shares. ------------------------------------------------------------- 6 SHARED VOTING POWER See response to row 5. ------------------------------------------------------------- 7 SOLE DISPOSITIVE POWER 2,823,029 shares, of which 2,710,141 are directly owned by PVP III, 70,242 are directly owned by Entrepreneurs' III and 42,646 are directly owned by Founders' III. Polaris III, the general partner of PVP III, Entrepreneurs' III and Founders' III, may be deemed to have sole power to dispose of these shares, and Flint, McGuire, Arnold and Spoon, the managing members of Polaris III, may be deemed to have shared power to dispose of these shares. ------------------------------------------------------------- 8 SHARED DISPOSITIVE POWER See response to row 7. - -------------------------------------------------------------------------------- 9 AGGREGATE AMOUNT BENEFICIALLY OWNED BY EACH REPORTING PERSON 2,823,029 - -------------------------------------------------------------------------------- 10 CHECK BOX IF THE AGGREGATE AMOUNT IN ROW (9) EXCLUDES CERTAIN SHARES* [ ] - -------------------------------------------------------------------------------- 11 PERCENT OF CLASS REPRESENTED BY AMOUNT IN ROW 9 14.6% - -------------------------------------------------------------------------------- 12 TYPE OF REPORTING PERSON* OO - -------------------------------------------------------------------------------- * SEE INSTRUCTIONS BEFORE FILLING OUT! CUSIP NO. 02043Q107 13 G Page 6 of 18 - -------------------------------------------------------------------------------- 1 NAME OF REPORTING SS OR I.R.S. IDENTIFICATION NO. OF ABOVE PERSON Jonathan A. Flint ("Flint") Tax ID Number: - -------------------------------------------------------------------------------- 2 CHECK THE APPROPRIATE BOX IF A MEMBER OF A GROUP* (a) [ ] (b) [X] - -------------------------------------------------------------------------------- 3 SEC USE ONLY - -------------------------------------------------------------------------------- 4 CITIZENSHIP OR PLACE OF ORGANIZATION U.S. Citizen - -------------------------------------------------------------------------------- 5 SOLE VOTING POWER 0 shares. NUMBER OF SHARES ------------------------------------------------------------- BENEFICIALLY 6 SHARED VOTING POWER OWNED BY EACH 2,823,029 shares, of which 2,710,141 are directly REPORTING owned by PVP III, 70,242 are directly owned by PERSON Entrepreneurs' III and 42,646 are directly owned by WITH Founders' III. Polaris III is the general partner of PVP III, Entrepreneurs' III and Founders' III. Flint is a managing member of Polaris III, and may be deemed to have shared power to vote these shares. ------------------------------------------------------------- 7 SOLE DISPOSITIVE POWER 0 shares. ------------------------------------------------------------- 8 SHARED DISPOSITIVE POWER 2,823,029 shares, of which 2,710,141 are directly owned by PVP III, 70,242 are directly owned by Entrepreneurs' III and 42,646 are directly owned by Founders' III. Polaris III is the general partner of PVP III, Entrepreneurs' III and Founders' III. Flint is a managing member of Polaris III, and may be deemed to have shared power to dispose of these shares. - -------------------------------------------------------------------------------- 9 AGGREGATE AMOUNT BENEFICIALLY OWNED BY EACH REPORTING PERSON 2,823,029 - -------------------------------------------------------------------------------- 10 CHECK BOX IF THE AGGREGATE AMOUNT IN ROW (9) EXCLUDES CERTAIN SHARES* [ ] - -------------------------------------------------------------------------------- 11 PERCENT OF CLASS REPRESENTED BY AMOUNT IN ROW 9 14.6% - -------------------------------------------------------------------------------- 12 TYPE OF REPORTING PERSON* IN - -------------------------------------------------------------------------------- * SEE INSTRUCTIONS BEFORE FILLING OUT! CUSIP NO. 02043Q107 13 G Page 7 of 18 - -------------------------------------------------------------------------------- 1 NAME OF REPORTING SS OR I.R.S. IDENTIFICATION NO. OF ABOVE PERSON Terrance G. McGuire ("McGuire") Tax ID Number: - -------------------------------------------------------------------------------- 2 CHECK THE APPROPRIATE BOX IF A MEMBER OF A GROUP* (a) [ ] (b) [X] - -------------------------------------------------------------------------------- 3 SEC USE ONLY - -------------------------------------------------------------------------------- 4 CITIZENSHIP OR PLACE OF ORGANIZATION U.S. Citizen - -------------------------------------------------------------------------------- 5 SOLE VOTING POWER 0 shares. NUMBER OF SHARES ------------------------------------------------------------- BENEFICIALLY 6 SHARED VOTING POWER OWNED BY EACH 2,823,029 shares, of which 2,710,141 are directly REPORTING owned by PVP III, 70,242 are directly owned by PERSON Entrepreneurs' III and 42,646 are directly owned by WITH Founders' III. Polaris III is the general partner of PVP III, Entrepreneurs' III and Founders' III. McGuire is a managing member of Polaris III, and may be deemed to have shared power to vote these shares. ------------------------------------------------------------- 7 SOLE DISPOSITIVE POWER 0 shares. ------------------------------------------------------------- 8 SHARED DISPOSITIVE POWER 2,823,029 shares, of which 2,710,141 are directly owned by PVP III, 70,242 are directly owned by Entrepreneurs' III and 42,646 are directly owned by Founders' III. Polaris III is the general partner of PVP III, Entrepreneurs' III and Founders' III. McGuire is a managing member of Polaris III, and may be deemed to have shared power to dispose of these shares. - -------------------------------------------------------------------------------- 9 AGGREGATE AMOUNT BENEFICIALLY OWNED BY EACH REPORTING PERSON 2,823,029 - -------------------------------------------------------------------------------- 10 CHECK BOX IF THE AGGREGATE AMOUNT IN ROW (9) EXCLUDES CERTAIN SHARES* [ ] - -------------------------------------------------------------------------------- 11 PERCENT OF CLASS REPRESENTED BY AMOUNT IN ROW 9 14.6% - -------------------------------------------------------------------------------- 12 TYPE OF REPORTING PERSON* IN - -------------------------------------------------------------------------------- * SEE INSTRUCTIONS BEFORE FILLING OUT! CUSIP NO. 02043Q107 13 G Page 8 of 18 - -------------------------------------------------------------------------------- 1 NAME OF REPORTING SS OR I.R.S. IDENTIFICATION NO. OF ABOVE PERSON Stephen D. Arnold ("Arnold") Tax ID Number: - -------------------------------------------------------------------------------- 2 CHECK THE APPROPRIATE BOX IF A MEMBER OF A GROUP* (a) [ ] (b) [X] - -------------------------------------------------------------------------------- 3 SEC USE ONLY - -------------------------------------------------------------------------------- 4 CITIZENSHIP OR PLACE OF ORGANIZATION U.S. Citizen - -------------------------------------------------------------------------------- 5 SOLE VOTING POWER 0 shares. ------------------------------------------------------------- NUMBER OF SHARES 6 SHARED VOTING POWER BENEFICIALLY 2,823,029 shares, of which 2,710,141 are directly OWNED BY EACH owned by PVP III, 70,242 are directly owned by REPORTING Entrepreneurs' III and 42,646 are directly owned by PERSON Founders' III. Polaris III is the general partner WITH of PVP III, Entrepreneurs' III and Founders' III. Arnold is a managing member of Polaris III, and may be deemed to have shared power to vote these shares. ------------------------------------------------------------- 7 SOLE DISPOSITIVE POWER 0 shares. ------------------------------------------------------------- 8 SHARED DISPOSITIVE POWER 2,823,029 shares, of which 2,710,141 are directly owned by PVP III, 70,242 are directly owned by Entrepreneurs' III and 42,646 are directly owned by Founders' III. Polaris III is the general partner of PVP III, Entrepreneurs' III and Founders' III. Arnold is a managing member of Polaris III, and may be deemed to have shared power to dispose of these shares. - -------------------------------------------------------------------------------- 9 AGGREGATE AMOUNT BENEFICIALLY OWNED BY EACH REPORTING PERSON 2,823,029 - -------------------------------------------------------------------------------- 10 CHECK BOX IF THE AGGREGATE AMOUNT IN ROW (9) EXCLUDES CERTAIN SHARES* [ ] - -------------------------------------------------------------------------------- 11 PERCENT OF CLASS REPRESENTED BY AMOUNT IN ROW 9 14.6% - -------------------------------------------------------------------------------- 12 TYPE OF REPORTING PERSON* IN - -------------------------------------------------------------------------------- * SEE INSTRUCTIONS BEFORE FILLING OUT! CUSIP NO. 02043Q107 13 G Page 9 of 18 - -------------------------------------------------------------------------------- 1 NAME OF REPORTING SS OR I.R.S. IDENTIFICATION NO. OF ABOVE PERSON Alan G. Spoon ("Spoon") Tax ID Number: - -------------------------------------------------------------------------------- 2 CHECK THE APPROPRIATE BOX IF A MEMBER OF A GROUP* (a) [ ] (b) [X] - -------------------------------------------------------------------------------- 3 SEC USE ONLY - -------------------------------------------------------------------------------- 4 CITIZENSHIP OR PLACE OF ORGANIZATION U.S. Citizen - -------------------------------------------------------------------------------- 5 SOLE VOTING POWER 0 shares. ------------------------------------------------------------- NUMBER OF SHARES 6 SHARED VOTING POWER BENEFICIALLY 2,823,029 shares, of which 2,710,141 are directly OWNED BY EACH owned by PVP III, 70,242 are directly owned by REPORTING Entrepreneurs' III and 42,646 are directly owned by PERSON Founders' III. Polaris III is the general partner WITH of PVP III, Entrepreneurs' III and Founders' III. Spoon is a managing member of Polaris III, and may be deemed to have shared power to vote these shares. ------------------------------------------------------------- 7 SOLE DISPOSITIVE POWER 0 shares. ------------------------------------------------------------- 8 SHARED DISPOSITIVE POWER 2,823,029 shares, of which 2,710,141 are directly owned by PVP III, 70,242 are directly owned by Entrepreneurs' III and 42,646 are directly owned by Founders' III. Polaris III is the general partner of PVP III, Entrepreneurs' III and Founders' III. Spoon is a managing member of Polaris III, and may be deemed to have shared power to dispose of these shares. - -------------------------------------------------------------------------------- 9 AGGREGATE AMOUNT BENEFICIALLY OWNED BY EACH REPORTING PERSON 2,823,029 - -------------------------------------------------------------------------------- 10 CHECK BOX IF THE AGGREGATE AMOUNT IN ROW (9) EXCLUDES CERTAIN SHARES* [ ] - -------------------------------------------------------------------------------- 11 PERCENT OF CLASS REPRESENTED BY AMOUNT IN ROW 9 14.6% - -------------------------------------------------------------------------------- 12 TYPE OF REPORTING PERSON* IN - -------------------------------------------------------------------------------- * SEE INSTRUCTIONS BEFORE FILLING OUT! CUSIP NO. 02043Q107 13 G Page 10 of 18 ITEM 1(A). NAME OF ISSUER Alnylam Pharmaceuticals, Inc. ITEM 1(B). ADDRESS OF ISSUER'S PRINCIPAL EXECUTIVE OFFICES 300 Third Street Cambridge, Massachusetts 02142 ITEM 2(A). NAME OF PERSONS FILING This Statement is filed by Polaris Venture Partners III, L.P., a Delaware limited partnership ("PVP III"), Polaris Venture Partners Entrepreneurs' Fund III, L.P., a Delaware limited partnership ("Entrepreneurs' III"), Polaris Venture Partners Founders' Fund III, L.P., a Delaware limited partnership ("Founders' III"), Polaris Venture Management Co. III, L.L.C., a Delaware limited liability company ("Polaris III"), Jonathan A. Flint ("Flint"), Terrance G. McGuire ("McGuire"), Stephen D. Arnold ("Arnold") and Alan G. Spoon ("Spoon"). Flint, McGuire, Arnold and Spoon are the managing members of Polaris III. The foregoing entities and individuals are collectively referred to as the "Reporting Persons." Polaris III, the general partner of PVP III, Entrepreneurs' III and Founders' III, may be deemed to have sole power to vote and sole power to dispose of shares of the issuer directly owned by PVP III, Entrepreneurs' III and Founders' III. Flint, McGuire, Arnold and Spoon are the managing members of Polaris III and may be deemed to have shared power to vote and shared power to dispose of shares of the issuer directly owned by PVP III, Entrepreneurs' III and Founders' III. ITEM 2(B). ADDRESS OF PRINCIPAL OFFICE The address for each of the Reporting Persons is: Polaris Venture Partners 1000 Winter Street, Suite 3350 Waltham, Massachusetts 02451 ITEM 2(C) CITIZENSHIP PVP III, Entrepreneurs' III and Founders' III are Delaware limited partnerships; Polaris III is a Delaware Limited Liability Company; Flint, McGuire, Arnold and Spoon are United States citizens. ITEM 2(D) AND (E). TITLE OF CLASS OF SECURITIES AND CUSIP NUMBER Common Stock CUSIP # 02043Q107 ITEM 3. Not Applicable ITEM 4. OWNERSHIP The following information with respect to the ownership of the Common Stock of the issuer by the persons filing this Statement is provided as of May 28, 2004: CUSIP NO. 02043Q107 13 G Page 11 of 18 (a) Amount beneficially owned: See Row 9 of cover page for each Reporting Person. (b) Percent of Class: See Row 11 of cover page for each Reporting Person. (c) Number of shares as to which such person has: (i) Sole power to vote or to direct the vote: See Row 5 of cover page for each Reporting Person. (ii) Shared power to vote or to direct the vote: See Row 6 of cover page for each Reporting Person. (iii) Sole power to dispose or to direct the disposition of: See Row 7 of cover page for each Reporting Person. (iv) Shared power to dispose or to direct the disposition of: See Row 8 of cover page for each Reporting Person. ITEM 5. OWNERSHIP OF FIVE PERCENT OR LESS OF A CLASS. Not applicable. ITEM 6. OWNERSHIP OF MORE THAN FIVE PERCENT ON BEHALF OF ANOTHER PERSON. Under certain circumstances set forth in the limited partnership agreements of PVP III, Entrepreneurs' III and Founders' III, the general and limited partners of each of such entities may be deemed to have the right to receive dividends from, or the proceeds from, the sale of shares of the issuer owned by each such entity of which they are a partner. ITEM 7. IDENTIFICATION AND CLASSIFICATION OF THE SUBSIDIARY WHICH ACQUIRED THE SECURITY BEING REPORTED ON BY THE PARENT HOLDING COMPANY Not applicable. ITEM 8. IDENTIFICATION AND CLASSIFICATION OF MEMBERS OF THE GROUP. Not applicable. ITEM 9. NOTICE OF DISSOLUTION OF GROUP. Not applicable. CUSIP NO. 02043Q107 13 G Page 12 of 18 ITEM 10. CERTIFICATION. Not applicable. Page 13 of 18 SIGNATURES After reasonable inquiry and to the best of my knowledge and belief, I certify that the information set forth in this statement is true, complete and correct. Dated: June 4, 2004 POLARIS VENTURE PARTNERS III, L.P., /s/ John J. Gannon a Delaware Limited Partnership --------------------------------------- Signature John J. Gannon Authorized Signatory POLARIS VENTURE PARTNERS /s/ John J. Gannon ENTREPRENEURS' FUND III, L.P., --------------------------------------- a Delaware Limited Partnership Signature John J. Gannon Authorized Signatory POLARIS VENTURE PARTNERS /s/ John J. Gannon FOUNDERS' FUND III, L.P., ---------------------------------------- a Delaware Limited Partnership Signature John J. Gannon Authorized Signatory POLARIS VENTURE MANAGEMENT CO. III, L.L.C., /s/ John J. Gannon a Delaware Limited Liability Company ---------------------------------------- Signature John J. Gannon Authorized Signatory JONATHAN A. FLINT /s/ John J. Gannon ---------------------------------------- Signature John J. Gannon Authorized Signatory
Page 14 of 18 TERRANCE G. MCGUIRE /s/ John J. Gannon ---------------------------------------- Signature John J. Gannon Authorized Signatory STEPHEN D. ARNOLD /s/ John J. Gannon ---------------------------------------- Signature John J. Gannon Authorized Signatory ALAN G. SPOON /s/ John J. Gannon ---------------------------------------- Signature John J. Gannon Authorized Signatory
Page 15 of 18 EXHIBIT INDEX
Found on Sequentially Exhibit Numbered Page ------- ------------- Exhibit A: Agreement of Joint Filing 16 Exhibit B: Reference to John J. Gannon as Authorized Signatory 18
Page 16 of 18 EXHIBIT A Agreement of Joint Filing The undersigned hereby agree that a single Schedule 13G (or any amendment thereto) relating to the Common Stock of Alnylam Pharmaceuticals, Inc. shall be filed on behalf of each of the undersigned and that this Agreement shall be filed as an exhibit to such Schedule 13G. Dated: June 4, 2004 POLARIS VENTURE PARTNERS III, L.P., /s/ John J. Gannon a Delaware Limited Partnership ---------------------------------------- Signature John J. Gannon Authorized Signatory POLARIS VENTURE PARTNERS /s/ John J. Gannon ENTREPRENEURS' FUND III, L.P., ---------------------------------------- a Delaware Limited Partnership Signature John J. Gannon Authorized Signatory POLARIS VENTURE PARTNERS /s/ John J. Gannon FOUNDERS' FUND III, L.P., ---------------------------------------- a Delaware Limited Partnership Signature John J. Gannon Authorized Signatory POLARIS VENTURE MANAGEMENT CO. III, L.L.C., /s/ John J. Gannon a Delaware Limited Liability Company ---------------------------------------- Signature John J. Gannon Authorized Signatory JONATHAN A. FLINT /s/ John J. Gannon ---------------------------------------- Signature John J. Gannon Authorized Signatory
Page 17 of 18 TERRANCE G. MCGUIRE /s/ John J. Gannon ---------------------------------------- Signature John J. Gannon Authorized Signatory STEPHEN D. ARNOLD /s/ John J. Gannon ---------------------------------------- Signature John J. Gannon Authorized Signatory ALAN G. SPOON /s/ John J. Gannon ---------------------------------------- Signature John J. Gannon Authorized Signatory
Page 18 of 18 EXHIBIT B REFERENCE TO JOHN J. GANNON AS AUTHORIZED SIGNATORY John J. Gannon has signed the enclosed documents as Authorized Signatory. Note that copies of the applicable Agreement to File Jointly and Statement Appointing Designated Filer And Authorized Signatory are already on file with the appropriate agencies. -----END PRIVACY-ENHANCED MESSAGE-----